Downloads:
1,491
Downloads of v 4.10:
452
Last Update:
27 Apr 2016
Package Maintainer(s):
Software Author(s):
- Nicolas Guex
- Alexandre Diemand
- Manuel C. Peitsch
- and Torsten Schwede
Tags:
deepview pdbviewer chemistry protein modeling- Software Specific:
- Software Site
- Software License
- Software Mailing List
- Software Issues
- Package Specific:
- Package Source
- Package outdated?
- Package broken?
- Contact Maintainers
- Contact Site Admins
- Software Vendor?
- Report Abuse
- Download
DeepView - Swiss PdbViewer
This is not the latest version of DeepView - Swiss PdbViewer available.
- 1
- 2
- 3
4.10 | Updated: 27 Apr 2016
- Software Specific:
- Software Site
- Software License
- Software Mailing List
- Software Issues
- Package Specific:
- Package Source
- Package outdated?
- Package broken?
- Contact Maintainers
- Contact Site Admins
- Software Vendor?
- Report Abuse
- Download
Downloads:
1,491
Downloads of v 4.10:
452
Maintainer(s):
Software Author(s):
- Nicolas Guex
- Alexandre Diemand
- Manuel C. Peitsch
- and Torsten Schwede
DeepView - Swiss PdbViewer 4.10
This is not the latest version of DeepView - Swiss PdbViewer available.
- 1
- 2
- 3
Some Checks Have Failed or Are Not Yet Complete
Not All Tests Have Passed
Deployment Method: Individual Install, Upgrade, & Uninstall
To install DeepView - Swiss PdbViewer, run the following command from the command line or from PowerShell:
To upgrade DeepView - Swiss PdbViewer, run the following command from the command line or from PowerShell:
To uninstall DeepView - Swiss PdbViewer, run the following command from the command line or from PowerShell:
Deployment Method:
This applies to both open source and commercial editions of Chocolatey.
1. Enter Your Internal Repository Url
(this should look similar to https://community.chocolatey.org/api/v2/)
2. Setup Your Environment
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment
Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
-
Download the package:
Download - Follow manual internalization instructions
-
-
Package Internalizer (C4B)
-
Run: (additional options)
choco download deepview --internalize --version=4.10 --source=https://community.chocolatey.org/api/v2/
-
For package and dependencies run:
choco push --source="'INTERNAL REPO URL'"
- Automate package internalization
-
Run: (additional options)
3. Copy Your Script
choco upgrade deepview -y --source="'INTERNAL REPO URL'" --version="'4.10'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade deepview -y --source="'INTERNAL REPO URL'" --version="'4.10'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Install deepview
win_chocolatey:
name: deepview
version: '4.10'
source: INTERNAL REPO URL
state: present
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
chocolatey_package 'deepview' do
action :install
source 'INTERNAL REPO URL'
version '4.10'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
cChocoPackageInstaller deepview
{
Name = "deepview"
Version = "4.10"
Source = "INTERNAL REPO URL"
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'deepview':
ensure => '4.10',
provider => 'chocolatey',
source => 'INTERNAL REPO URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
4. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
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This package was approved by moderator doc on 27 Apr 2016.
Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.
$desktop = $([Environment]::GetFolderPath([Environment+SpecialFolder]::DesktopDirectory))
$shortcut = Join-Path $desktop 'Swiss-PdbViewer.lnk'
if ([System.IO.File]::Exists($shortcut)) {
Write-Debug "Found the desktop shortcut. Deleting it..."
[System.IO.File]::Delete($shortcut)
}
Log in or click on link to see number of positives.
- deepview.4.10.nupkg (7c02ac896783) - ## / 57
- libcurl.dll (43673252f611) - ## / 54
- spdbv.exe (f85ff6d662f8) - ## / 55
- SPDBV_4.10_PC.zip (369c0c9b6e05) - ## / 56
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Add to Builder | Version | Downloads | Last Updated | Status |
---|---|---|---|---|
DeepView - Swiss PdbViewer 4.10.0.20161116 | 1039 | Wednesday, November 16, 2016 | Approved | |
DeepView - Swiss PdbViewer 4.10 | 452 | Wednesday, April 27, 2016 | Approved |
This package has no dependencies.
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- This discussion is only about DeepView - Swiss PdbViewer and the DeepView - Swiss PdbViewer package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
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