Downloads:

158

Downloads of v 2.6.1:

158

Last Update:

27 Jan 2020

Package Maintainer(s):

Software Author(s):

  • SerialBasics

Tags:

serialcloner molecular biology dna

Serial Cloner

2.6.1 | Updated: 27 Jan 2020

Downloads:

158

Downloads of v 2.6.1:

158

Maintainer(s):

Software Author(s):

  • SerialBasics

Serial Cloner 2.6.1

All Checks are Passing

2 Passing Test


Validation Testing Passed


Verification Testing Passed

Details

To install Serial Cloner, run the following command from the command line or from PowerShell:

>

To upgrade Serial Cloner, run the following command from the command line or from PowerShell:

>

To uninstall Serial Cloner, run the following command from the command line or from PowerShell:

>

NOTE: This applies to both open source and commercial editions of Chocolatey.

1. Ensure you are set for organizational deployment

Please see the organizational deployment guide

  • Open Source or Commercial:
    • Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://chocolatey.org/api/v2. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
    • You can also just download the package and push it to a repository Download

3. Enter your internal repository url

(this should look similar to https://chocolatey.org/api/v2)

4. Choose your deployment method:


choco upgrade serialcloner -y --source="'STEP 3 URL'" [other options]

See options you can pass to upgrade.

See best practices for scripting.

Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.

If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:


choco upgrade serialcloner -y --source="'STEP 3 URL'"
$exitCode = $LASTEXITCODE

Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
  Exit 0
}

Exit $exitCode

- name: Ensure serialcloner installed
  win_chocolatey:
    name: serialcloner
    state: present
    version: 2.6.1
    source: STEP 3 URL

See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.

Coming early 2020! Central Managment Reporting available now! More information...


chocolatey_package 'serialcloner' do
  action    :install
  version  '2.6.1'
  source   'STEP 3 URL'
end

See docs at https://docs.chef.io/resource_chocolatey_package.html.


Chocolatey::Ensure-Package
(
    Name: serialcloner,
    Version: 2.6.1,
    Source: STEP 3 URL
);

Requires Otter Chocolatey Extension. See docs at https://inedo.com/den/otter/chocolatey.


cChocoPackageInstaller serialcloner
{
   Name     = 'serialcloner'
   Ensure   = 'Present'
   Version  = '2.6.1'
   Source   = 'STEP 3 URL'
}

Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.


package { 'serialcloner':
  provider => 'chocolatey',
  ensure   => '2.6.1',
  source   => 'STEP 3 URL',
}

Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.


salt '*' chocolatey.install serialcloner version="2.6.1" source="STEP 3 URL"

See docs at https://docs.saltstack.com/en/latest/ref/modules/all/salt.modules.chocolatey.html.

5. If applicable - Chocolatey configuration/installation

See infrastructure management matrix for Chocolatey configuration elements and examples.

Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...

This package was approved by moderator mwallner on 27 Jan 2020.

Description

Serial Cloner has been developed to provide a light yet powerful molecular biology software to Windows users.
Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format.
Serial Cloner also import files saved in the Vector NTI, MacVector, ApE, DNAstar, pDRAW32 and GenBank formats. Import from VectorNTI multi-file format is also supported.
Powerful graphical display tools and simple interfaces help the analysis and construction steps in a very intuitive way. Serial Cloner handles Annotations and Features both in the sequence and in the Graphic Map and can automatically scan for sequence Features.


tools\.skipAutoUninstall
 
tools\chocolateyinstall.ps1
$ErrorActionPreference = 'Stop'
$url = 'http://serialbasics.free.fr/Serial_Cloner-Download_files/SerialCloner2-6_Install.exe'

$packageArgs = @{
  packageName    = $env:ChocolateyPackageName
  fileType       = 'EXE'
  url            = $url
  softwareName   = 'Serial Cloner*'
  checksum       = 'DD12834C36B562F6AE3017B3BFD7F9631D5A662537F27FB2E5BF6E2D3DCA71F0'
  checksumType   = 'sha256'
  silentArgs     = '/VERYSILENT /SUPPRESSMSGBOXES /NORESTART /SP-'
  validExitCodes = @(0)
}

Install-ChocolateyPackage @packageArgs
tools\chocolateyuninstall.ps1
$ErrorActionPreference = 'Stop'
$packageArgs = @{
  packageName    = $env:ChocolateyPackageName
  softwareName   = 'Serial Cloner*'
  fileType       = 'EXE'
  silentArgs     = '/VERYSILENT /SUPPRESSMSGBOXES /NORESTART /SP-'
  validExitCodes = @(0)
}

[array]$key = Get-UninstallRegistryKey -SoftwareName $packageArgs['softwareName']

if ($key.Count -eq 1) {
  $key | ForEach-Object { 
    $packageArgs['file'] = "$($_.UninstallString)"
    
    if ($packageArgs['fileType'] -eq 'MSI') {
      $packageArgs['silentArgs'] = "$($_.PSChildName) $($packageArgs['silentArgs'])"
      $packageArgs['file'] = ''
    }
    Uninstall-ChocolateyPackage @packageArgs
  }
}
elseif ($key.Count -eq 0) {
  Write-Warning "$packageName has already been uninstalled by other means."
}
elseif ($key.Count -gt 1) {
  Write-Warning "$($key.Count) matches found!"
  Write-Warning "To prevent accidental data loss, no programs will be uninstalled."
  Write-Warning "Please alert package maintainer the following keys were matched:"
  $key | ForEach-Object { Write-Warning "- $($_.DisplayName)" }
}

Log in or click on link to see number of positives.

In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).

Chocolatey Pro provides runtime protection from possible malware.

Version Downloads Last Updated Status

Version 2.6.1

  • [ADDED] a preference to limit or not the width of Seq and Prot windows
  • [CORRECTED] Detection of overlapping Primers in PCR
  • [CORRECTED] Bug in "show info" toggle under Windows and Linux
  • [CORRECTED] Slow down under certain Windows install due to autosaving
  • [CORRECTED] Error in definition of PreScission site
  • [CORRECTED] Save/Save As problem is PCR window
  • [CORRECTED] Insertion point position when editing a protein sequence

This package has no dependencies.

Discussion for the Serial Cloner Package

Ground Rules:

  • This discussion is only about Serial Cloner and the Serial Cloner package. If you have feedback for Chocolatey, please contact the Google Group.
  • This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
  • The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
  • Tell us what you love about the package or Serial Cloner, or tell us what needs improvement.
  • Share your experiences with the package, or extra configuration or gotchas that you've found.
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